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Register Arrow tables from DuckDB for use in BioBear sessions

Status: Open.

#206 In wheretrue/biobear;

· arajkovic opened on Jul 23, 2025

Read and collect gene sets from MSigDB in .gmt format

Status: Open.

#186 In wheretrue/biobear;

· abearab opened on Dec 12, 2024

Improve attribute data structure for gtf_scan

Status: Open.

#177 In wheretrue/biobear;

· jdcla opened on Sep 12, 2024

Error executing FASTQScan

Status: Open.

#170 In wheretrue/biobear;

· tshauck opened on Aug 27, 2024

Infer extension and compression from file path.

Status: Open.

#154 In wheretrue/biobear;

· tshauck opened on Jun 21, 2024

Investigate granges rust crate

Status: Open.

#150 In wheretrue/biobear;

· ghuls opened on Jun 19, 2024

merge paired-end sequences

Status: Open.

#116 In wheretrue/biobear;

· abearab opened on Apr 5, 2024

alternative for seqkit locate that can locate subsequences/motifs

Status: Open.

#106 In wheretrue/biobear;

· abearab opened on Mar 7, 2024

Update https://www.wheretrue.dev/ w/ Trimming Example

Status: Open.

#103 In wheretrue/biobear;

· tshauck opened on Feb 28, 2024

How to run polars dataframe methods on large FASTQ files in a memory efficient way

Status: Open.

#99 In wheretrue/biobear;

· abearab opened on Feb 27, 2024

Why different handling between GFF and mzml/genbank in polars.

Status: Open.

#93 In wheretrue/biobear;

· tshauck opened on Feb 5, 2024