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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. distributions distributions Public

    Makefile 5 11

  2. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 19 30

  3. docs docs Public archive

    Python 21 60

Repositories

Showing 10 of 81 repositories
  • q2-boots Public

    q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾

    qiime2/q2-boots’s past year of commit activity
    Python 3 BSD-3-Clause 7 10 4 Updated Apr 5, 2026
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Makefile 5 BSD-3-Clause 11 5 6 Updated Apr 5, 2026
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 2 3 1 Updated Apr 5, 2026
  • amplicon-docs Public

    Source for QIIME 2 amplicon documentation.

    qiime2/amplicon-docs’s past year of commit activity
    Makefile 1 2 6 0 Updated Apr 4, 2026
  • qiime2/action-library-packaging’s past year of commit activity
    Python 0 BSD-3-Clause 5 0 1 Updated Apr 2, 2026
  • q2-fmt Public

    q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!

    qiime2/q2-fmt’s past year of commit activity
    Python 6 BSD-3-Clause 10 7 1 Updated Mar 31, 2026
  • moving-pictures-tutorial Public

    Moving Pictures Tutorial source

    qiime2/moving-pictures-tutorial’s past year of commit activity
    Makefile 0 1 2 1 Updated Mar 31, 2026
  • gut-to-soil-tutorial Public

    The gut-to-soil axis microbiome analysis tutorial

    qiime2/gut-to-soil-tutorial’s past year of commit activity
    Makefile 1 4 4 0 Updated Mar 31, 2026
  • q2-diversity Public
    qiime2/q2-diversity’s past year of commit activity
    Python 3 BSD-3-Clause 44 44 2 Updated Mar 27, 2026
  • q2-phylogeny Public

    Phylogenetic reconstruction, and operations on phylogenetic trees.

    qiime2/q2-phylogeny’s past year of commit activity
    Python 5 BSD-3-Clause 20 2 0 Updated Mar 27, 2026

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