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    38 repositories

    • cave-scripts

      Public
      Notebooks to interact with the CAVE infrastructure, hosted by the Lichtman Lab and VCG at Harvard.
      Jupyter Notebook
      •1•11•1•0•Updated Jan 30, 2026Jan 30, 2026

    • fish1-release

      Public
      Webpage resources for Fish1-release
      HTML
      •0•0•0•0•Updated Dec 19, 2025Dec 19, 2025

    • CAVEdeployment

      Public
      Shell
      •
      MIT License
      •6•0•0•0•Updated Sep 4, 2025Sep 4, 2025

    • FFD4DenSpineEM

      Public
      [TMI'25] Frenet-Serret Frame-based Decomposition for Part Segmentation of 3D Curvilinear Structures
      Jupyter Notebook
      •
      MIT License
      •0•10•0•0•Updated May 8, 2025May 8, 2025

    • momo

      Public
      Python
      •0•5•0•0•Updated Apr 8, 2025Apr 8, 2025

    • MaterializationEngine

      Public
      Python
      •
      MIT License
      •5•0•0•0•Updated Mar 20, 2025Mar 20, 2025

    • CAVEclient

      Public
      This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
      Python
      •
      MIT License
      •15•0•0•0•Updated Dec 3, 2024Dec 3, 2024

    • cell2cellRelease

      Public
      cell 2 cell analysis tool
      Jupyter Notebook
      •0•4•0•0•Updated Oct 16, 2024Oct 16, 2024

    • vimo-sketches

      Public
      A React component to sketch / search for network motifs.
      reactjavascriptnode
      reactjavascriptnodegraphssketchingmotif-findingnode-link-diagrams
      JavaScript
      •
      MIT License
      •4•8•2•1•Updated Sep 30, 2024Sep 30, 2024

    • MinneTaskQueue

      Public
      collection of scripts for running large scale tasks on Microns Data
      Python
      •
      Other
      •1•0•0•0•Updated May 13, 2024May 13, 2024

    • EMAnnotationSchemas

      Public
      Repository to hold schemas for annotations of volumetric imaging data focused on EM
      Python
      •
      MIT License
      •15•0•0•0•Updated Apr 8, 2024Apr 8, 2024

    • PyChunkedGraph

      Public
      Data backend for fast proofreading of cell segmentations in connectomics datasets
      Python
      •
      Mozilla Public License 2.0
      •12•0•0•0•Updated Mar 23, 2024Mar 23, 2024

    • neuroglancer

      Public
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •359•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • psc

      Public
      Parallel Separable 3D Convolution for Video and Volumetric Data Understanding
      C++
      •
      MIT License
      •1•7•1•0•Updated Jan 28, 2024Jan 28, 2024

    • trust_in_science

      Public
      HTML
      •
      MIT License
      •2•2•0•0•Updated Nov 13, 2023Nov 13, 2023

    • vis_design_sprints_tutorial_2023

      Public
      Materials for the IEEE Vis 2023 Tutorial on "Visualization Design Sprints".
      0•0•0•0•Updated Oct 23, 2023Oct 23, 2023

    • neuroglancer-seunglab

      Public
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •359•0•0•0•Updated Oct 18, 2023Oct 18, 2023

    • ProofreadingProgress

      Public
      HTML
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated Sep 29, 2023Sep 29, 2023

    • cloudrun-demo

      Public
      Tutorial to deploy client/server app in Google Cloud Run
      reactjavascriptpython
      reactjavascriptpythondeploymentserverlessgcloudfastapicloudrun
      JavaScript
      •
      MIT License
      •0•6•0•0•Updated Sep 29, 2023Sep 29, 2023

    • ng-extend

      Public
      TypeScript
      •8•0•0•0•Updated Sep 28, 2023Sep 28, 2023

    • vimo-server

      Public
      vimo backend microservice
      Jupyter Notebook
      •1•2•0•0•Updated Jun 9, 2023Jun 9, 2023

    • experiential_learning_vis

      Public
      HTML
      •
      MIT License
      •2•0•0•0•Updated Apr 27, 2023Apr 27, 2023

    • rallly

      Public
      Self-hostable doodle poll alternative. Find the best date for a meeting with your colleagues or friends without the back and forth emails.
      TypeScript
      •
      GNU Affero General Public License v3.0
      •507•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • Barrio

      Public
      A visual tool to compare and analyze nanoscale brain structures.
      C++
      •
      MIT License
      •1•0•0•0•Updated Jul 11, 2022Jul 11, 2022

    • upset

      Public
      UpSet - Visualizing Intersecting Sets
      JavaScript
      •
      MIT License
      •65•240•76•1•Updated Dec 31, 2021Dec 31, 2021

    • compresso

      Public
      Compresso: Efficient Compression of Segmentation Data For Connectomics
      encodingcompressionmri
      encodingcompressionmriconnectomicssegmantationbockwurst
      C++
      •
      MIT License
      •5•12•2•0•Updated Sep 7, 2021Sep 7, 2021

    • newbie-wiki

      Public
      VCG Newbie Wiki Page
      MIT License
      •3•1•0•0•Updated Aug 6, 2020Aug 6, 2020

    • perception

      Public
      Jupyter Notebook
      •2•0•0•0•Updated Feb 17, 2020Feb 17, 2020

    • guidedproofreading

      Public
      Guided Proofreading of Automatic Segmentations for Connectomics
      Jupyter Notebook
      •
      MIT License
      •2•5•1•0•Updated Jun 19, 2018Jun 19, 2018

    • alignment_and_padding

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 5, 2018Apr 5, 2018
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