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@CBICA Center for Biomedical Image Computing & Analytics (CBICA)

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    80 repositories

    • NiChart_DLMUSE

      Public
      Python
      •
      Other
      •6•5•16•2•Updated Apr 16, 2026Apr 16, 2026

    • spare_score

      Public
      Compute SPARE scores to detect characteristic feature patterns
      Python
      •
      Other
      •7•4•0•1•Updated Apr 16, 2026Apr 16, 2026

    • DLMUSE

      Public
      A repository that allows users to apply the DLMUSE method to their brain imaging data.
      Python
      •
      Other
      •2•15•3•0•Updated Apr 16, 2026Apr 16, 2026

    • NiChart_Project

      Public
      Neuro Imaging Chart of AI-based Imaging Biomarkers
      Python
      •
      Other
      •8•24•9•0•Updated Apr 16, 2026Apr 16, 2026

    • DLICV

      Public
      A repository that allows users to apply the DLICV method to their brain imaging data.
      deeplearningmedical-image-processingmedical-image-analysis
      deeplearningmedical-image-processingmedical-image-analysisimagesegmentationnnunet
      Python
      •
      Other
      •0•2•0•0•Updated Apr 16, 2026Apr 16, 2026

    • BIDS_NiChart_DLMUSE

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•2•Updated Apr 13, 2026Apr 13, 2026

    • NiChart_DKGP

      Public
      Python
      •0•0•0•0•Updated Mar 30, 2026Mar 30, 2026

    • AI-guided-radiation-dose-escalation

      Public
      Code accompanying the study “Personalized Machine Learning-Guided Radiation Dose Escalation in Newly Diagnosed Glioblastoma.”
      Shell
      •0•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • NiChart_SPARE

      Public
      Python
      •
      Other
      •0•0•2•0•Updated Dec 10, 2025Dec 10, 2025

    • NiChart_DLWMLS

      Public
      Python
      •
      Other
      •0•0•1•0•Updated Dec 3, 2025Dec 3, 2025

    • DLWMLS

      Public
      Python
      •
      Other
      •0•0•0•2•Updated Nov 24, 2025Nov 24, 2025

    • apptainer-examples

      Public
      Examples of building Apptainer containers for Python, etc.
      pythonhpccontainers
      pythonhpccontainerssingularityapptainer
      Shell
      •0•0•0•0•Updated Nov 20, 2025Nov 20, 2025

    • MRISnapshot

      Public
      A QC tool for verification of datasets with MRI images and derived masks
      Python
      •
      MIT License
      •2•6•0•0•Updated Oct 24, 2025Oct 24, 2025

    • DLUAAS

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Sep 2, 2025Sep 2, 2025

    • NiChart_Visualizations

      Public
      Repo for any NiChart related downstream analysis scripts (Python/R preferred)
      Python
      •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • spare_cvm_score

      Public
      Compute SPARE-CVM scores to detect characteristic feature patterns
      Python
      •
      Other
      •7•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • SPARE_SVM

      Public
      Python
      •
      Other
      •0•1•0•0•Updated May 30, 2025May 30, 2025

    • FigureGenerator

      Public
      This helps creating high quality figures for use in manuscripts and presentations.
      screenshotsmedical-imagingfigure-maker
      screenshotsmedical-imagingfigure-makerfiguresscreenshot-generator
      Python
      •
      Other
      •2•12•2•0•Updated May 14, 2025May 14, 2025

    • CCL_NMF_Prediction

      Public
      Prediction tool for 7 CCL_NMF component loadings
      Python
      •
      MIT License
      •1•0•1•0•Updated Apr 28, 2025Apr 28, 2025

    • BrainMaGe

      Public
      Brain extraction in presence of abnormalities, using single and multiple MRI modalities
      pythonmachine-learningdeep-learning
      pythonmachine-learningdeep-learningpytorchneuroimagingsegmentationnihbrain-extractionskull-strippingpytorch-lightning
      Python
      •
      Other
      •10•38•1•4•Updated Mar 21, 2025Mar 21, 2025

    • slurm_billing_report

      Public
      Prints out usage and charge for given Slurm account and time period.
      Go
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Dec 6, 2024Dec 6, 2024

    • GBM_Survival_ReSPOND_2024

      Public
      MATLAB
      •
      Other
      •1•1•0•0•Updated Dec 2, 2024Dec 2, 2024

    • PredCRD

      Public
      Python
      •1•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • NiChart_Viewer

      Public
      Visualization tool for Neuroimaging Chart (NiChart) imaging descriptors and biomarkers
      nichart
      nichart
      Python
      •
      Other
      •0•1•0•0•Updated Sep 10, 2024Sep 10, 2024

    • NiChart_Workflows

      Public
      HTML
      •3•1•1•1•Updated Aug 22, 2024Aug 22, 2024

    • SurrealGAN

      Public
      Python
      •
      MIT License
      •14•0•0•1•Updated Jul 19, 2024Jul 19, 2024

    • NiChart_Website

      Public
      The Landing page for the NiChart project
      visualizationmachine-learningimage-processing
      visualizationmachine-learningimage-processingneuroimagingneuroimaging-analysis
      JavaScript
      •
      Other
      •3•1•0•0•Updated May 25, 2024May 25, 2024

    • NiChart_Harmonize

      Public
      Statistical harmonization package in NiChart
      nichart
      nichart
      Python
      •
      MIT License
      •0•1•1•0•Updated May 24, 2024May 24, 2024

    • TIP

      Public
      Translational Imaging Pipelines
      Python
      •
      Other
      •3•1•2•0•Updated Feb 7, 2024Feb 7, 2024

    • NiChart_Tissue_Segmentation

      Public
      Brain tissue segmentation using FSL FAST and DLICV
      Python
      •
      Other
      •0•2•0•0•Updated Feb 2, 2024Feb 2, 2024
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