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Calico

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  1. basenji basenji Public

    Sequential regulatory activity predictions with deep convolutional neural networks.

    Python 467 136

  2. borzoi borzoi Public

    RNA-seq prediction with deep convolutional neural networks.

    Python 234 31

  3. scBasset scBasset Public

    Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

    Jupyter Notebook 101 13

  4. solo solo Public

    software to detect doublets

    Python 97 14

  5. scnym scnym Public

    Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

    Python 78 13

  6. baskerville baskerville Public

    Machine learning methods for DNA sequence analysis.

    Python 61 17

Repositories

Showing 10 of 58 repositories
  • claman Public

    Calico Lipidomics and Metabolomics (CLaM) Analysis provides a suite of functions which support data manipulation, statistical analysis and visualizations of mzrollDB files created by MAVEN.

    calico/claman’s past year of commit activity
    R 3 0 5 0 Updated Mar 31, 2026
  • calicolabs-auto-anubis-vialweighing Public

    ANUBIS: An automated vial weighing system with the Meca500 robotic arm

    calico/calicolabs-auto-anubis-vialweighing’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 30, 2026
  • westminster Public

    Benchmarking baskerville models for regulatory sequence activity prediction

    calico/westminster’s past year of commit activity
    Python 2 Apache-2.0 3 1 2 Updated Mar 29, 2026
  • msTrawler Public
    calico/msTrawler’s past year of commit activity
    R 9 GPL-2.0 2 0 0 Updated Mar 22, 2026
  • mzkitcpp Public

    R package of mass spectrometry utility functions and processing algorithms written in C++

    calico/mzkitcpp’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Mar 19, 2026
  • shorkie-paper Public

    Data processing and analyses related to regulatory sequence prediction in yeast.

    calico/shorkie-paper’s past year of commit activity
    Python 7 Apache-2.0 3 1 0 Updated Mar 7, 2026
  • baskerville Public

    Machine learning methods for DNA sequence analysis.

    calico/baskerville’s past year of commit activity
    Python 61 Apache-2.0 17 1 3 Updated Feb 27, 2026
  • mouse_cardiac_mri_segmentation Public

    Code for publication "Automated cardiac MRI analysis for robust profiling of heart failure models in mice"

    calico/mouse_cardiac_mri_segmentation’s past year of commit activity
    Python 0 MIT 0 0 3 Updated Feb 11, 2026
  • scnym Public

    Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

    calico/scnym’s past year of commit activity
    Python 78 Apache-2.0 13 7 6 Updated Jan 23, 2026
  • basenji Public

    Sequential regulatory activity predictions with deep convolutional neural networks.

    calico/basenji’s past year of commit activity
    Python 467 Apache-2.0 136 83 5 Updated Jan 15, 2026

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