ome-arrow/pyproject.toml at main · WayScience/ome-arrow · GitHub

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[build-system]
build-backend = "setuptools.build_meta"
requires = [ "setuptools>=64", "setuptools-scm>=8", "uv-dynamic-versioning" ]

[project]
name = "ome-arrow"
description = "Using OME specifications with Apache Arrow for fast, queryable, and language agnostic bioimage data."
readme = "README.md"
authors = [
  { name = "Dave Bunten" },
]
requires-python = ">=3.11"
classifiers = [
  "Programming Language :: Python :: 3 :: Only",
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
  "Programming Language :: Python :: 3.13",
  "Programming Language :: Python :: 3.14",
]
dynamic = [ "version" ]
dependencies = [
  "bioio>=3",
  "bioio-ome-tiff>=1.4",
  "bioio-ome-zarr>=3.0.3",
  "bioio-tifffile>=1.3",
  "fire>=0.7",
  "matplotlib>=3.10.7",
  "numpy>=2.2.6",
  "pandas>=2.2.3",
  "pillow>=12",
  "pyarrow>=22",
]
optional-dependencies.dlpack = [
  "jax>=0.4.1",
  "torch>=2.1",
]
optional-dependencies.dlpack-jax = [
  "jax>=0.4.1",
]
optional-dependencies.dlpack-torch = [
  "torch>=2.1",
]
optional-dependencies.viz = [
  "ipywidgets>=8.1.8",
  "jupyterlab-widgets>=3.0.16",
  "pyvista>=0.46.4",
  "trame>=3.12",
  "trame-vtk>=2.10",
  "trame-vuetify>=3.1",
]
optional-dependencies.vortex = [
  "vortex-data>=0.56",
]

[dependency-groups]
dev = [
  "poethepoet>=0.34",
  "pytest>=8.3.5",
  "vortex-data>=0.56",
]
docs = [
  "myst-nb>=1.2",
  "pydata-sphinx-theme>=0.16.1",
  "sphinx>=8.2.3",
]
notebooks = [
  "black>=25.1",
  "ipykernel>=6.29.5",
  "isort>=6.0.1",
  "jupyterlab>=4.4.2",
  "jupyterlab-code-formatter>=3.0.2",
  "jupytext>=1.17.1",
]

[tool.setuptools]
package-dir = { "" = "src" }
packages.find.where = [ "src" ]

[tool.setuptools_scm]
root = "."
version_scheme = "no-guess-dev"
local_scheme = "no-local-version"
version_file = "src/ome_arrow/_version.py"

[tool.ruff]
target-version = "py311"
line-length = 88
fix = true
lint.select = [
  # flake8-builtins
  "A",
  # flake8-annotations
  "ANN",
  # flake8-comprehensions
  "C4",
  # mccabe
  "C90",
  # pydocstyle (docstring presence)
  "D100",
  "D101",
  "D102",
  "D103",
  "D104",
  "D105",
  "D106",
  "D107",
  # pycodestyle
  "E",
  # pyflakes
  "F",
  # isort
  "I",
  # pylint
  "PL",
  # ruff
  "RUF",
  # flake8-simplify
  "SIM",
  "W",
]
# ignore various rules for all
lint.per-file-ignores."*" = [ "ANN401", "C901", "PLC0415", "PLR0912", "PLR0913", "PLR0915", "PLR2004" ]
# Ignore `F401` (unused imports) for `__init__.py` file
lint.per-file-ignores."__init__.py" = [ "F401" ]
# ignore docstring presence checks for docs
lint.per-file-ignores."docs/*" = [ "D100", "D101", "D102", "D103", "D104", "D105", "D106", "D107" ]
# allow notebook-style mid-file imports in paired examples
lint.per-file-ignores."docs/src/examples/learning_to_fly_with_ome-arrow.py" = [ "E402" ]
# ignore typing rules for tests
lint.per-file-ignores."tests/*" = [ "ANN201", "E501", "PLR0913", "PLR2004" ]

[tool.pytest]
ini_options.pythonpath = [ "." ]

[tool.jupytext]
formats = "ipynb,py:light"

[tool.vulture]
min_confidence = 90
paths = [ "src/ome_arrow", "tests" ]

[tool.uv-dynamic-versioning]
vcs = "git"
style = "semver"

[tool.poe]
# tasks for development environments
tasks.test.shell = """
pytest
"""
tasks.jupyter.shell = """
jupyter lab
"""